Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11791371_11792964_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11791371 - 11792964

Intron Length:

1594

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGATTC

5'SS Class:

strong_major

3'SS Sequence:

TTCCCTCCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCACAT

U12 Branch Point Sequence:

TTCTCCTTCCCT

Flanking Amino Acid:

AECQTLEEEEIYNLKRDPIV

Intron Amino Acid Position:

1501

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

75.9

34.8

Major BPS

77.7

0.69

83.3

27.7

Major PPT

82.5

0.73

0.7

77.1

24.9

Minor 5ss

41.1

-1

3.4

58.5

46.3

Minor BPS

47.1

-0.1

3.6

83.36

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030133

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038546

11705930 - 11805643

99714