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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11793086_11795691_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11793086 - 11795691
Intron Length:
2606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTGTTTTGATC
Flanking Amino Acid:
LLGSGQPCDLDRPLSDNLCQ
Intron Amino Acid Position:
1541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.7
0.67
0.8
79
28.3
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
57.3
0.21
1.3
64.88
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030133
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038546
11705930 - 11805643
99714