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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11795907_11797501_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11795907 - 11797501
Intron Length:
1595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAGCAA
U12 Branch Point Sequence:
TGGATAGCAACC
Flanking Amino Acid:
SRAKCSVAAKCSLLMDGLCL
Intron Amino Acid Position:
1613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.8
31.7
Major BPS
48.1
-0.1
1.3
57.8
39
Major PPT
76.9
0.61
0.7
72.7
25.7
Minor 5ss
39.9
-1.1
2.8
51.4
45.5
Minor BPS
38.9
-0.8
2.2
49
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030133
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038546
11705930 - 11805643
99714