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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11801625_11805517_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11801625 - 11805517
Intron Length:
3893

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAC
U12 Branch Point Sequence:
TTGCCCCCAACA
Flanking Amino Acid:
HLLYPQNEKQAKELLCCLFD
Intron Amino Acid Position:
1665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.7
1.15
0.7
85.2
31.4
Major BPS
61.7
0.29
1
63.7
32.3
Major PPT
86
0.81
0.6
84.8
22.9
Minor 5ss
24.8
-2.9
3.6
33.7
41.6
Minor BPS
53.9
0.12
1.9
70.41
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030133
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038546
11705930 - 11805643
99714