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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11815876_11825820_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11815876 - 11825820
Intron Length:
9945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ATCTGCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
AAAGCCATGACG
Flanking Amino Acid:
KEELQPLHLHSTAMSAGSIE
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1.2
76.7
33.6
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
77.1
0.61
0.9
69.9
36
Minor 5ss
29.4
-2.4
2.9
36.5
40.5
Minor BPS
48
-0.3
1.8
51.7
42.3

Associated Gene:

Gene:
SBK1
Ensembl Gene ID:
ENSAPLG00000007470
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007749
11814005 - 11825882
11878