About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11858372_11858481_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11858372 - 11858481
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
GTGTGTCTAATC
Flanking Amino Acid:
VKSRLEELDERVLCWWRQAE
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
85.6
0.8
0.8
83.6
31.5
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
47.2
-0.2
2
59.21
40.5

Associated Gene:

Gene:
XPO6
Ensembl Gene ID:
ENSAPLG00000007480
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021432
11845267 - 11883749
38483