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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11858372_11861778_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11858372 - 11861778
Intron Length:
3407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCCTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GTTTTCTTAATT
Flanking Amino Acid:
VKSRLEELDESYIEKFTDFL
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
75.5
0.57
0.8
69.9
30.9
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
84.3
1.15
0.9
92.31
29.9

Associated Gene:

Gene:
XPO6
Ensembl Gene ID:
ENSAPLG00000007480
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007799
11845228 - 11883749
38522