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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11875971_11877247_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11875971 - 11877247
Intron Length:
1277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAACCA
5'SS Class:
major
3'SS Sequence:
TGTTCTATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CCTGTTCTATCT
Flanking Amino Acid:
ALFPAFIHQSDVTDEMLSFF
Intron Amino Acid Position:
819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1
60.3
38.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
75.9
0.58
0.8
74.5
35
Minor 5ss
37.7
-1.4
3.1
48.9
46.8
Minor BPS
43.8
-0.3
1.9
58.9
45.1

Associated Gene:

Gene:
XPO6
Ensembl Gene ID:
ENSAPLG00000007480
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007799
11845228 - 11883749
38522
ENSAPLT00000021432
11845267 - 11883749
38483