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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11877681_11877768_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11877681 - 11877768
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACTG
5'SS Class:
major
3'SS Sequence:
TTCTGATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATTT
Flanking Amino Acid:
MEQVYPIIAEELKCQSLCRV
Intron Amino Acid Position:
925

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.4
45.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82.1
0.72
0.9
73.4
41
Minor 5ss
34.2
-1.8
3.5
46.9
48.4
Minor BPS
64
0.52
1.7
84.31
36.7

Associated Gene:

Gene:
XPO6
Ensembl Gene ID:
ENSAPLG00000007480
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021432
11845267 - 11883749
38483