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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11877805_11878122_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11877805 - 11878122
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGACTAGA
5'SS Class:
major
3'SS Sequence:
TCTTTCCTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTAGAC
U12 Branch Point Sequence:
TAGACTTAGAGT
Flanking Amino Acid:
KCQSLCRVSWRSSPDVKAEL
Intron Amino Acid Position:
937

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
65
42.7
Major BPS
56.9
0.17
1.1
56.1
39.6
Major PPT
80.3
0.68
0.7
73.6
31.4
Minor 5ss
34.8
-1.7
2.6
33.7
41.6
Minor BPS
44.9
-0.3
2
59.91
44.1

Associated Gene:

Gene:
XPO6
Ensembl Gene ID:
ENSAPLG00000007480
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021432
11845267 - 11883749
38483