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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11892622_11892826_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11892622 - 11892826
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
GCCTTGTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CCGTGCTGACCG
Flanking Amino Acid:
EFKRIDILVNGAAGNFLCPA
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
61.9
39.6
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
68.9
0.42
0.9
60.7
40.3
Minor 5ss
38.9
-1.2
3
46.9
44
Minor BPS
42
-0.7
2.1
43.2
48.2

Associated Gene:

Gene:
DECR2
Ensembl Gene ID:
ENSAPLG00000007534
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007823
11891755 - 11894195
2441