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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11892952_11893358_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11892952 - 11893358
Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TGCCCCCTGACT
Flanking Amino Acid:
SKVLFEKYFRDHGGVIINIT
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
71.1
40.4
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
78.5
0.64
0.7
70.1
30.8
Minor 5ss
32.6
-2
3.1
35.3
41.4
Minor BPS
58.1
0.34
1.7
74.82
41.5

Associated Gene:

Gene:
DECR2
Ensembl Gene ID:
ENSAPLG00000007534
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007823
11891755 - 11894195
2441