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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11910136_11921507_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11910136 - 11921507
Intron Length:
11372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGGTGAT
U12 Branch Point Sequence:
CTTTCGGTGATT
Flanking Amino Acid:
HRGIRAIRNGDPDSQLYDMG
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
53.7
0.09
1.4
46.5
47
Major PPT
86.5
0.82
0.7
81.3
23.7
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
47
-0.1
2.6
74.24
43.6

Associated Gene:

Gene:
RAB11FIP3
Ensembl Gene ID:
ENSAPLG00000007552
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007841
11895768 - 11955689
59922
ENSAPLT00000032349
11895768 - 11955689
59922