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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11937517_11944228_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11937517 - 11944228
Intron Length:
6712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTC
5'SS Class:
major
3'SS Sequence:
GTTCGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CTTTCCTAACCC
Flanking Amino Acid:
SFNSSSFLSPSPNKRLSSKK
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
72
0.55
1
71.8
31.4
Major PPT
82.6
0.73
0.9
76.5
37.5
Minor 5ss
35.4
-1.7
3.4
50.6
45.9
Minor BPS
59.8
0.29
2
73.88
43.5

Associated Gene:

Gene:
RAB11FIP3
Ensembl Gene ID:
ENSAPLG00000007552
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007841
11895768 - 11955689
59922