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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11972597_11972726_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11972597 - 11972726
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
CTGCCCACCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CCCCTCTCACCC
Flanking Amino Acid:
YEDNCGDSENIFHSDKILGD
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.3
66.6
39.6
Major BPS
72.7
0.56
1
75
30.1
Major PPT
64.8
0.33
0.9
55
35
Minor 5ss
29
-2.4
3.1
33.7
35
Minor BPS
43.9
-0.4
1.8
46.76
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002398
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002439
11970925 - 11973785
2861