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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11972823_11972918_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11972823 - 11972918
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
CTCTGCGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
CCGTCCCCAGCT
Flanking Amino Acid:
IPERYYRSLEDPRFFSSAKT
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
58.7
46.2
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
67
0.38
0.9
57.3
38.6
Minor 5ss
34.2
-1.8
3.6
46.8
48.5
Minor BPS
44.6
-0.3
2.1
60.72
48.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002398
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002439
11970925 - 11973785
2861