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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11975384_11975455_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11975384 - 11975455
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGTGATG
5'SS Class:
major
3'SS Sequence:
GCCGGCGCCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCATCAT
U12 Branch Point Sequence:
CCATCATGAGGC
Flanking Amino Acid:
RMFPGQRGMEGRIYLSSFKG
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.4
1.1
62.3
43.6
Major BPS
63.3
0.33
1.2
65.6
39.7
Major PPT
54.7
0.11
1
45.6
36.6
Minor 5ss
29.1
-2.4
3.4
38.8
46.6
Minor BPS
39.8
-0.7
2
45.11
42.9

Associated Gene:

Gene:
MSS51
Ensembl Gene ID:
ENSAPLG00000002712
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023230
11974386 - 11976865
2480