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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11976132_11976270_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11976132 - 11976270
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGGG
5'SS Class:
major
3'SS Sequence:
TGTGTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
CCACCCCCAGGG
Flanking Amino Acid:
PDPKSLRRCKRCQNVYYCGV
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
58.9
46
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
72.1
0.5
0.9
62.7
39.7
Minor 5ss
27.5
-2.6
3.6
37.8
47
Minor BPS
33.5
-1.3
2
30.61
40.7

Associated Gene:

Gene:
MSS51
Ensembl Gene ID:
ENSAPLG00000002712
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002737
11974386 - 11976865
2480
ENSAPLT00000023230
11974386 - 11976865
2480