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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11978722_11980704_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11978722 - 11980704
Intron Length:
1983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGCGC
5'SS Class:
major
3'SS Sequence:
CTTTGTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAT
U12 Branch Point Sequence:
CTTTGTTTGACA
Flanking Amino Acid:
QVTVVKAQDLKSIRSDTSST
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
53.8
43.4
Major BPS
64.6
0.36
1.3
67.6
40.6
Major PPT
79
0.65
1
75.6
38.3
Minor 5ss
30.6
-2.2
3.4
38.7
41.8
Minor BPS
62.4
0.38
1.8
73.66
38.8

Associated Gene:

Gene:
CFAP70
Ensembl Gene ID:
ENSAPLG00000002851
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047259
11976009 - 11999645
23637
ENSAPLT00000026780
11976009 - 11999645
23637
ENSAPLT00000017411
11977538 - 11999645
22108
ENSAPLT00000002879
11976009 - 11999645
23637