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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11981352_11981609_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11981352 - 11981609
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAACAT
5'SS Class:
major
3'SS Sequence:
TGGTTCTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TCTCAGTGGACG
Flanking Amino Acid:
AVVDLLPLLQGQCSFTVLAP
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
65.1
40.7
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
79.1
0.66
0.9
77
37.2
Minor 5ss
31.9
-2.1
3.5
47.5
47.9
Minor BPS
41.2
-0.8
2.3
49.88
43.9

Associated Gene:

Gene:
CFAP70
Ensembl Gene ID:
ENSAPLG00000002851
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026780
11976009 - 11999645
23637
ENSAPLT00000017411
11977538 - 11999645
22108
ENSAPLT00000002879
11976009 - 11999645
23637
ENSAPLT00000047259
11976009 - 11999645
23637