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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11983288_11983595_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11983288 - 11983595
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTGGCTCTGACC
Flanking Amino Acid:
DEDGELNKTEDKEFRIQAES
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
77.4
0.62
0.8
71.8
32.8
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
47.9
-0.1
1.8
57.6
42.1

Associated Gene:

Gene:
CFAP70
Ensembl Gene ID:
ENSAPLG00000002851
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026780
11976009 - 11999645
23637
ENSAPLT00000017411
11977538 - 11999645
22108
ENSAPLT00000002879
11976009 - 11999645
23637
ENSAPLT00000047259
11976009 - 11999645
23637