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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11983688_11984828_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11983688 - 11984828
Intron Length:
1141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGGGAT
5'SS Class:
major
3'SS Sequence:
TTTCTGCATTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTGCATT
Flanking Amino Acid:
RCYLDPAAVLILQKRIAECR
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
75.1
34.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.2
0.68
0.9
77.9
35.5
Minor 5ss
33.3
-1.9
3.7
50.9
46.1
Minor BPS
60.4
0.41
1.9
84.15
37

Associated Gene:

Gene:
CFAP70
Ensembl Gene ID:
ENSAPLG00000002851
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026780
11976009 - 11999645
23637
ENSAPLT00000017411
11977538 - 11999645
22108
ENSAPLT00000002879
11976009 - 11999645
23637
ENSAPLT00000047259
11976009 - 11999645
23637