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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11986041_11987407_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11986041 - 11987407
Intron Length:
1367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TCATTGTTATTT
Flanking Amino Acid:
TYQDSEVLEKTKKQQSILRD
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
77.6
0.62
0.8
68.6
31.8
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
47.7
-0
2.2
67.57
44

Associated Gene:

Gene:
CFAP70
Ensembl Gene ID:
ENSAPLG00000002851
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026780
11976009 - 11999645
23637
ENSAPLT00000017411
11977538 - 11999645
22108
ENSAPLT00000002879
11976009 - 11999645
23637
ENSAPLT00000047259
11976009 - 11999645
23637