About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11987894_11988390_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11987894 - 11988390
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTTG
5'SS Class:
strong_major
3'SS Sequence:
GTTGTGTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTAAT
U12 Branch Point Sequence:
GTTGTGTCCACA
Flanking Amino Acid:
TEKFLGLDGQQYAEAGTFLV
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1.1
78.8
38.3
Major BPS
58.9
0.22
1.4
61.7
43.1
Major PPT
72
0.5
1
64.8
41.4
Minor 5ss
49.4
-0
2.5
66.9
44.4
Minor BPS
39.8
-0.8
2.5
55.34
43.9

Associated Gene:

Gene:
CFAP70
Ensembl Gene ID:
ENSAPLG00000002851
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026780
11976009 - 11999645
23637
ENSAPLT00000017411
11977538 - 11999645
22108
ENSAPLT00000002879
11976009 - 11999645
23637
ENSAPLT00000047259
11976009 - 11999645
23637