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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11988483_11990935_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11988483 - 11990935
Intron Length:
2453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCATTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTCTCATTGACA
Flanking Amino Acid:
PKRLREELTKRVKEMIPPRP
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
81
26.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
72.4
0.51
1
68.2
36.5
Minor 5ss
35.7
-1.6
2.6
41.3
45.3
Minor BPS
63.8
0.43
1.7
71.5
40.7

Associated Gene:

Gene:
CFAP70
Ensembl Gene ID:
ENSAPLG00000002851
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047259
11976009 - 11999645
23637
ENSAPLT00000026780
11976009 - 11999645
23637
ENSAPLT00000017411
11977538 - 11999645
22108
ENSAPLT00000002879
11976009 - 11999645
23637