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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11990997_11992049_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11990997 - 11992049
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTATATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTTATTAATT
Flanking Amino Acid:
LPPRTEGAKKAVEDYHSQVT
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
73.9
0.54
0.9
66.5
39.1
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
71.8
0.76
1.5
86.09
33.4

Associated Gene:

Gene:
CFAP70
Ensembl Gene ID:
ENSAPLG00000002851
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026780
11976009 - 11999645
23637
ENSAPLT00000017411
11977538 - 11999645
22108
ENSAPLT00000002879
11976009 - 11999645
23637
ENSAPLT00000047259
11976009 - 11999645
23637