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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11992242_11992863_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11992242 - 11992863
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAAGACT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAAGCAT
U12 Branch Point Sequence:
CAAGCATCACCT
Flanking Amino Acid:
KYFAFKEQLKYAVVKIVREK
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.81
1
82.5
29.7
Major BPS
47.3
-0.1
1.4
55.4
40.3
Major PPT
74.5
0.55
0.8
68
32.2
Minor 5ss
23.9
-3
4
40.4
45.5
Minor BPS
41.7
-0.5
2
55.44
45.9

Associated Gene:

Gene:
CFAP70
Ensembl Gene ID:
ENSAPLG00000002851
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047259
11976009 - 11999645
23637
ENSAPLT00000026780
11976009 - 11999645
23637
ENSAPLT00000017411
11977538 - 11999645
22108
ENSAPLT00000002879
11976009 - 11999645
23637