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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11993695_11994122_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11993695 - 11994122
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGGAG
5'SS Class:
major
3'SS Sequence:
CTCTTGTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATAAAC
U12 Branch Point Sequence:
GAGCCCTTACTC
Flanking Amino Acid:
YKLAALYHQQRIAQDKHNTQ
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
62.4
37.9
Major BPS
48.7
-0
1.2
57
36.4
Major PPT
76.7
0.6
1
71.9
38
Minor 5ss
22.5
-3.2
3.3
27.7
44.2
Minor BPS
52.7
0.07
1.6
57.82
40.9

Associated Gene:

Gene:
CFAP70
Ensembl Gene ID:
ENSAPLG00000002851
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002879
11976009 - 11999645
23637
ENSAPLT00000047259
11976009 - 11999645
23637
ENSAPLT00000026780
11976009 - 11999645
23637
ENSAPLT00000017411
11977538 - 11999645
22108