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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11995235_11995926_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11995235 - 11995926
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGGGAG
5'SS Class:
major
3'SS Sequence:
CATTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
CAGTTTGGGACT
Flanking Amino Acid:
EAPASEAAPEGPPPISGLSQ
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.3
63.9
42.4
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
88.9
0.88
0.7
84.3
30.2
Minor 5ss
24
-3
3.2
28.7
43.7
Minor BPS
41.9
-0.5
2
55.03
41.7

Associated Gene:

Gene:
CFAP70
Ensembl Gene ID:
ENSAPLG00000002851
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047259
11976009 - 11999645
23637
ENSAPLT00000017411
11977538 - 11999645
22108
ENSAPLT00000002879
11976009 - 11999645
23637