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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11996837_11997557_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11996837 - 11997557
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATCCTC
5'SS Class:
major
3'SS Sequence:
TTTGTGTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTTAC
U12 Branch Point Sequence:
CGTGCCTTACTC
Flanking Amino Acid:
LCEAVRIDFMNPDVWALKGH
Intron Amino Acid Position:
938

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
61.7
43
Major BPS
51.2
0.03
1.2
45.3
39.5
Major PPT
73.3
0.52
1
68.1
42.3
Minor 5ss
42.6
-0.8
3.1
56.9
41.8
Minor BPS
54.6
0.12
1.8
62.34
43.7

Associated Gene:

Gene:
CFAP70
Ensembl Gene ID:
ENSAPLG00000002851
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026780
11976009 - 11999645
23637
ENSAPLT00000017411
11977538 - 11999645
22108
ENSAPLT00000002879
11976009 - 11999645
23637
ENSAPLT00000047259
11976009 - 11999645
23637