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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11997720_11999059_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11997720 - 11999059
Intron Length:
1340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACACCC
Flanking Amino Acid:
LGSIYLEEKELEEMGEAEDA
Intron Amino Acid Position:
992

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.5
0.53
1
71.7
33.2
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
49.2
-0
2.1
71.2
40

Associated Gene:

Gene:
CFAP70
Ensembl Gene ID:
ENSAPLG00000002851
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047259
11976009 - 11999645
23637