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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11998206_11999059_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11998206 - 11999059
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCACACCC
Flanking Amino Acid:
WLGVGIACYRLEEMGEAEDA
Intron Amino Acid Position:
1022

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.1
34.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.5
0.53
1
71.7
33.2
Minor 5ss
27.1
-2.6
2.9
24.2
36.8
Minor BPS
49.2
-0
2.1
71.2
40

Associated Gene:

Gene:
CFAP70
Ensembl Gene ID:
ENSAPLG00000002851
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026780
11976009 - 11999645
23637
ENSAPLT00000017411
11977538 - 11999645
22108
ENSAPLT00000002879
11976009 - 11999645
23637