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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12007262_12007683_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12007262 - 12007683
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTGTG
5'SS Class:
major
3'SS Sequence:
TGATTTTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTTCTCTGATTT
Flanking Amino Acid:
EKWHDHYDYIRFPSEGSKLP
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
69.2
41.7
Major BPS
79
0.72
1
69
38.9
Major PPT
73.9
0.54
1
73
41.9
Minor 5ss
35.3
-1.7
3.5
49.3
46.9
Minor BPS
49.8
0.06
1.7
69.64
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002966
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032682
12006033 - 12024072
18040