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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12007752_12008344_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12007752 - 12008344
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAATG
5'SS Class:
major
3'SS Sequence:
TCTTGTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
CTTTCCAAAAGA
Flanking Amino Acid:
IQKSCSSPAAGGQPSEDPVC
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
71.5
40.2
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
82.4
0.73
0.8
73.6
37
Minor 5ss
30.2
-2.3
3.2
39
46.4
Minor BPS
48.7
-0.1
2.2
67.8
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002966
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032682
12006033 - 12024072
18040