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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12009801_12010096_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12009801 - 12010096
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGACCA
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGGTGAC
U12 Branch Point Sequence:
CTCGGGGTGACT
Flanking Amino Acid:
LASRRAAHCRSFLPDPILRL
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65.3
40.7
Major BPS
45.4
-0.2
1.4
34.5
43.7
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
31.8
-2.1
3
32.6
41.5
Minor BPS
35.2
-1
2.7
53.73
48.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002966
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032682
12006033 - 12024072
18040