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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12011082_12011374_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12011082 - 12011374
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TGCGTCTCACCT
Flanking Amino Acid:
KAHMQVLLSLSFSYSGAVLC
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
82.3
0.73
0.8
76.3
32.3
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
46.9
-0.1
1.9
63.97
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002966
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032682
12006033 - 12024072
18040
ENSAPLT00000003052
12004741 - 12023396
18656