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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12013156_12013383_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12013156 - 12013383
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGGGGC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTGAC
U12 Branch Point Sequence:
ACCCAGTTGACC
Flanking Amino Acid:
SAEREPEDRTLFVCSKSGHV
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.2
58.1
41
Major BPS
62.5
0.31
1.1
54.8
42.1
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
32.5
-2
3.7
50.7
46
Minor BPS
43.3
-0.5
2.2
50.22
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002966
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032682
12006033 - 12024072
18040