Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12014663_12015207_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12014663 - 12015207

Intron Length:

545

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TGTCTTTCCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

TGTGTGCTGACT

Flanking Amino Acid:

LDFSAVVLEAEHEAPVTSVC

Intron Amino Acid Position:

506

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

74.1

38.4

Major BPS

66.3

0.4

1.1

41.8

Major PPT

80.6

0.69

0.8

73.1

37.3

Minor 5ss

29.2

-2.4

2.5

36.7

Minor BPS

44.2

-0.3

2.4

67.94

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002966

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032682

12006033 - 12024072

18040

ENSAPLT00000003052

12004741 - 12023396

18656