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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12018224_12018783_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12018224 - 12018783
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCGCTTCGA
5'SS Class:
weak_major
3'SS Sequence:
GCGCGTGATGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCGTGAT
U12 Branch Point Sequence:
CAGCCCGGAGTC
Flanking Amino Acid:
DKVIKVWDYQISGRALSQVY
Intron Amino Acid Position:
808

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.8
0.04
1.4
47.3
40.6
Major BPS
50.9
0.02
1.4
45
47.8
Major PPT
44.4
-0.3
1.7
42.2
42.3
Minor 5ss
19.2
-3.5
3.6
26.9
36.8
Minor BPS
37.9
-0.9
2.1
41.67
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002966
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003052
12004741 - 12023396
18656