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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12018940_12019549_F

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12018940 - 12019549
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TCACAGAAAAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCTTTTCACA
Flanking Amino Acid:
ALPVERSPPALSEKLKDVSD
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
68.4
36.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
41.8
-0.4
1.7
36.5
38
Minor 5ss
35.9
-1.6
3.2
51.5
44.9
Minor BPS
61.7
0.36
1.7
75.92
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002966
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003052
12004741 - 12023396
18656