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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12019057_12019542_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12019057 - 12019542
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGCAA
U12 Branch Point Sequence:
TTTCTTTTCACA
Flanking Amino Acid:
SSESSPLPGAEKSSEKLKDV
Intron Amino Acid Position:
900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
58
0.2
1.3
69.6
37.5
Major PPT
90.8
0.92
0.6
87.1
23.5
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
61.7
0.36
1.7
75.92
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002966
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032682
12006033 - 12024072
18040