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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12019663_12020084_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12019663 - 12020084
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGGA
5'SS Class:
major
3'SS Sequence:
TTTTATTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTC
Flanking Amino Acid:
VSSVHLAGCQSIFSESDREE
Intron Amino Acid Position:
940

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
36.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.8
0.92
0.7
89.2
27.2
Minor 5ss
31.5
-2.1
3.4
38.5
40.9
Minor BPS
60.6
0.31
1.5
68.94
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002966
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032682
12006033 - 12024072
18040