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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12021172_12022114_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12021172 - 12022114
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
CTTGATTTAAGC
Flanking Amino Acid:
PRFKASALPQSFVSPPAGNE
Intron Amino Acid Position:
1034

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
89.9
0.9
0.7
84.9
29.9
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
49.5
-0
1.9
62.36
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002966
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032682
12006033 - 12024072
18040