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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12040449_12041935_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12040449 - 12041935
Intron Length:
1487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCC
5'SS Class:
major
3'SS Sequence:
TTGGCCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGCCAT
U12 Branch Point Sequence:
TGCTTGGCCATT
Flanking Amino Acid:
SRRISAAGGAGACRPCNDTE
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71.5
33.9
Major BPS
48.8
-0
1.5
58.2
48.3
Major PPT
73.8
0.54
1
66.7
39.3
Minor 5ss
29.1
-2.4
3.7
41.3
45.5
Minor BPS
32.5
-1.3
2.6
51.39
43.9

Associated Gene:

Gene:
METRN
Ensembl Gene ID:
ENSAPLG00000024043
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038234
12039821 - 12042634
2814