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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12048047_12048412_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12048047 - 12048412
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGGCC
5'SS Class:
major
3'SS Sequence:
CTTCTTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GCTTCTTTCATT
Flanking Amino Acid:
VSFLKQDLWKANLSDCYNVT
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
68.8
38
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
79.4
0.66
1
78.5
33.7
Minor 5ss
36
-1.6
3.6
50.9
45.8
Minor BPS
61.9
0.46
1.7
75.88
41.7

Associated Gene:

Gene:
ANTKMT
Ensembl Gene ID:
ENSAPLG00000020960
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018090
12047278 - 12049347
2070