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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12056941_12057591_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12056941 - 12057591
Intron Length:
651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
GCTTGTCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCGATCTCATCT
Flanking Amino Acid:
EHKQQNLEKNLLGNQDRIKV
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.3
36.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
73.2
0.52
0.9
69.5
36.8
Minor 5ss
33.3
-1.9
3.4
44.7
43.5
Minor BPS
47.7
-0
1.8
64.24
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004763
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004930
12049002 - 12062753
13752
ENSAPLT00000004922
12049002 - 12062753
13752