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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12057643_12057730_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12057643 - 12057730
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCAAATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TCTTCTTCAAAT
Flanking Amino Acid:
ARRVSAQKVKPEDALASEHK
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
72.1
0.5
1
72.1
36.9
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
65.6
0.57
1.6
81.38
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004763
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004930
12049002 - 12062753
13752
ENSAPLT00000004922
12049002 - 12062753
13752