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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12057905_12058451_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12057905 - 12058451
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCATT
5'SS Class:
strong_major
3'SS Sequence:
CTTGACCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TCTTGCTTGACC
Flanking Amino Acid:
HGAVGWLLLEVLKNEELSLE
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.5
35.1
Major BPS
74.1
0.6
1
69
38.9
Major PPT
67.4
0.39
1
62
39.6
Minor 5ss
55
0.17
2.5
74.6
41.7
Minor BPS
68.6
0.57
1.8
77.58
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004763
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004930
12049002 - 12062753
13752