About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12058545_12061117_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12058545 - 12061117
Intron Length:
2573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCACCTGTAACA
Flanking Amino Acid:
LALGKELDQEILFIFWKCVT
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
67.7
39.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.2
0.75
0.8
81.6
29.2
Minor 5ss
25.9
-2.8
2.9
29.3
43.4
Minor BPS
52.6
0.08
2
65.27
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004763
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004930
12049002 - 12062753
13752