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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_12061298_12061515_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12061298 - 12061515
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCAAA
5'SS Class:
major
3'SS Sequence:
CCCCCCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GCTGGTCTAATT
Flanking Amino Acid:
ETENFELKNMILSLENRVLE
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
68.6
37.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
74.9
0.56
0.7
68.2
25.3
Minor 5ss
44.9
-0.5
2.6
53.5
45.8
Minor BPS
44.4
-0.3
2.1
60.4
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004763
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004930
12049002 - 12062753
13752
ENSAPLT00000004922
12049002 - 12062753
13752